Dataset: Habitat complexity photos collected along the Northern Central California coast from 2017 to 2021

Name: Habitat complexity photos collected along the Northern Central California coast from 2017 to 2021
Published: 2024-02-29
Keywords: abundance, California, demography, echinoderm, gene flow, genetic drift, intertidal, invertebrate, mass mortality, population genetics, population genomics, sea star wasting disease, selection, oceans

ValidatedFinal no updates expectedVersion 3 (2024-02-29)Dataset Type:Other Field Results

Principal Investigator: Michael N. Dawson (University of California-Merced)

Contact: Lauren Schiebelhut (University of California-Merced)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath (PoGOMO)

Abstract

Habitat complexity photos collected along the Northern Central California coast from 2017 to 2021. GPS waypoints, quadrat sampling information and species counts, measurements, and tissue samples were collected concurrently with the photos.

Cite Dataset

Spatial Extent: N:38.92 E:-120.67 S:35.15 W:-123.72
Temporal Extent: 2017-12-02 - 2021-07-25

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Data File(s)	Type	Description	Action
2017_2018_Photos.zip (18.47 GB)	ZIP Archive (ZIP)	2017 to 2018 Habitat Complexity Photos. 3122 images are contained within this file bundle. JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.	Add to Cart Download
2018_2019_Photos.zip (18.31 GB)	ZIP Archive (ZIP)	2018 to 2019 Habitat Complexity Photos. 3083 images are contained within this file bundle. JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.	Add to Cart Download
2019_2020_Photos.zip (15.53 GB)	ZIP Archive (ZIP)	2019 to 2020 Habitat Complexity Photos. 2635 images are contained within this file bundle. JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.	Add to Cart Download
2020_2021_Photos.zip (18.99 GB)	ZIP Archive (ZIP)	JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.	Add to Cart Download

Supplemental File(s)	Type	Description	Action
751642_v3_habitat-photo-inventory.csv (2.77 MB)	Comma Separated Values (.csv)	Photo inventory for the habitat complexity images contained within .zip file bundles available for download in the Data Files section. The general site lat/lon is listed in this file. The specific lat/lon for each photograph are contained in the quadrat-counts file for all specimen photos and the quadrat-data file for all quadrat photos (See "Related Datasets" section for Quadrat Data and Quadrat Count datasets). This photo inventory is a comma-delimited data table with the following columns: Date, Date the survey was conducted in ISO 8601 format image_name,The name of the photo taken of the quadrat sector Site_Code, Survey site code Site, Survey site location name Area_Number, Area number (1 or 2) within the site Latitude, generic site latitude in decimal degrees Longitude, generic site longitude in decimal degrees relative_filepath, Relative path within the .zipfile bundles where the images are stored (folders and filenames) filesize_bytes, image filesize in bytes md5sum, file checksum (md5) which can be used to verify image integrity after transferring storage locations	Add to Cart Download View Table

Files

Filename: 2017_2018_Photos.zip (18.47 GB)
Type: ZIP Archive (ZIP)
Description: 2017 to 2018 Habitat Complexity Photos. 3122 images are contained within this file bundle. JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.

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Filename: 2018_2019_Photos.zip (18.31 GB)
Type: ZIP Archive (ZIP)
Description: 2018 to 2019 Habitat Complexity Photos. 3083 images are contained within this file bundle. JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.

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Filename: 2019_2020_Photos.zip (15.53 GB)
Type: ZIP Archive (ZIP)
Description: 2019 to 2020 Habitat Complexity Photos. 2635 images are contained within this file bundle. JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.

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Filename: 2020_2021_Photos.zip (18.99 GB)
Type: ZIP Archive (ZIP)
Description: JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.

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Supplemental Files

Filename: 751642_v3_habitat-photo-inventory.csv (2.77 MB)
Type: Comma Separated Values (.csv)
Description: Photo inventory for the habitat complexity images contained within .zip file bundles available for download in the Data Files section. The general site lat/lon is listed in this file. The specific lat/lon for each photograph are contained in the quadrat-counts file for all specimen photos and the quadrat-data file for all quadrat photos (See "Related Datasets" section for Quadrat Data and Quadrat Count datasets). This photo inventory is a comma-delimited data table with the following columns: Date, Date the survey was conducted in ISO 8601 format image_name,The name of the photo taken of the quadrat sector Site_Code, Survey site code Site, Survey site location name Area_Number, Area number (1 or 2) within the site Latitude, generic site latitude in decimal degrees Longitude, generic site longitude in decimal degrees relative_filepath, Relative path within the .zipfile bundles where the images are stored (folders and filenames) filesize_bytes, image filesize in bytes md5sum, file checksum (md5) which can be used to verify image integrity after transferring storage locations

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This page serves the "Habitat Complexity Photos" dataset. See "Related Datasets" section for access to the other data types mentioned in the study data description below and the Methods & Sampling section.

The general site lat/lon is listed in the supplemental file "751642_v3_habitat-photo-inventory.csv" in this dataset. The specific lat/lon for each photograph are contained in the quadrat-counts file "751650_v3_quadrat-counts.csv" for all specimen photos and the quadrat-data file "751634_v3_quadrat-data.csv" for all quadrat photos (See "Related Datasets" section for Quadrat Data (BCO-DMO dataset 751634) and Quadrat Count (BCO-DMO dataset 751650)).

Images are available to download as .tar.gz file bundles in the "Data Files" section of this page. A photo inventory table including date and site information is available in the "Supplemental Files" section.

Study data description:

Abundances and sizes of target invertebrates in quadrat surveys; photos of habitat complexity and a subset of specimens; and GPS coordinates of quadrats.

Related Datasets

IsRelatedTo

Dataset: GPS waypoints
Relationship Description: These data were collected concurrently.

Dawson, M. N., Schiebelhut, L. (2025) GPS waypoints for habitat complexity photos collected along the Northern Central California coast from 2017 to 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 3) Version Date 2024-02-29 doi:10.26008/1912/bco-dmo.750667.3

IsRelatedTo

Dataset: Quadrat data
Relationship Description: These data were collected concurrently. These data were collected concurrently. Photo names in "Habitat Complexity Photos" dataset will match to the Quadrat_Photo listed in this "Quadrat data" dataset.

Dawson, M. N., Schiebelhut, L. (2025) Quadrat sampling information along the Northern Central California coast from 2017 to 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 3) Version Date 2024-02-29 doi:10.26008/1912/bco-dmo.751634.3

IsRelatedTo

Dataset: Quadrat counts
Relationship Description: These data were collected concurrently. Photo names in "Habitat Complexity Photos" will match to the Photo_ID listed in this "Quadrat count" dataset.

Dawson, M. N., Schiebelhut, L. (2025) Quadrat species counts and measurements along the Northern Central California coast from 2017 to 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 3) Version Date 2025-05-12 doi:10.26008/1912/bco-dmo.751650.3

IsRelatedTo

Dataset: Site List
Relationship Description: These data were collected concurrently.

Dawson, M. N., Schiebelhut, L. (2025) Site list for habitat complexity photos and related datasets sampled along the Northern Central California coast from 2017 and 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 3) Version Date 2024-02-29 doi:10.26008/1912/bco-dmo.751658.3

Related Publications

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Dataset: Habitat complexity photos collected along the Northern Central California coast from 2017 to 2021

ValidatedFinal no updates expectedVersion 3 (2024-02-29)Dataset Type:Other Field Results

Principal Investigator: Michael N. Dawson (University of California-Merced)

Contact: Lauren Schiebelhut (University of California-Merced)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath (PoGOMO)

Abstract

Cite Dataset

Spatial Extent: N:38.92 E:-120.67 S:35.15 W:-123.72
Temporal Extent: 2017-12-02 - 2021-07-25

Add to Cart

Data File(s)	Type	Description	Action
2017_2018_Photos.zip (18.47 GB)	ZIP Archive (ZIP)	2017 to 2018 Habitat Complexity Photos. 3122 images are contained within this file bundle. JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.	Add to Cart Download
2018_2019_Photos.zip (18.31 GB)	ZIP Archive (ZIP)	2018 to 2019 Habitat Complexity Photos. 3083 images are contained within this file bundle. JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.	Add to Cart Download
2019_2020_Photos.zip (15.53 GB)	ZIP Archive (ZIP)	2019 to 2020 Habitat Complexity Photos. 2635 images are contained within this file bundle. JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.	Add to Cart Download
2020_2021_Photos.zip (18.99 GB)	ZIP Archive (ZIP)	JPG image files are contained in two folder sublevels within this file bundle. See photo inventory data table for metadata.	Add to Cart Download

Supplemental File(s)	Type	Description	Action
751642_v3_habitat-photo-inventory.csv (2.77 MB)	Comma Separated Values (.csv)	Photo inventory for the habitat complexity images contained within .zip file bundles available for download in the Data Files section. The general site lat/lon is listed in this file. The specific lat/lon for each photograph are contained in the quadrat-counts file for all specimen photos and the quadrat-data file for all quadrat photos (See "Related Datasets" section for Quadrat Data and Quadrat Count datasets). This photo inventory is a comma-delimited data table with the following columns: Date, Date the survey was conducted in ISO 8601 format image_name,The name of the photo taken of the quadrat sector Site_Code, Survey site code Site, Survey site location name Area_Number, Area number (1 or 2) within the site Latitude, generic site latitude in decimal degrees Longitude, generic site longitude in decimal degrees relative_filepath, Relative path within the .zipfile bundles where the images are stored (folders and filenames) filesize_bytes, image filesize in bytes md5sum, file checksum (md5) which can be used to verify image integrity after transferring storage locations	Add to Cart Download View Table

Files

Add to Cart Download

Supplemental Files

Add to Cart Download View Table

Study data description:

Abundances and sizes of target invertebrates in quadrat surveys; photos of habitat complexity and a subset of specimens; and GPS coordinates of quadrats.

Related Datasets

IsRelatedTo

Dataset: GPS waypoints
Relationship Description: These data were collected concurrently.

IsRelatedTo

Dataset: Site List
Relationship Description: These data were collected concurrently.

Related Publications

No Related Publications

Dataset: Habitat complexity photos collected along the Northern Central California coast from 2017 to 2021

Principal Investigator: Michael N. Dawson (University of California-Merced)

Contact: Lauren Schiebelhut (University of California-Merced)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath (PoGOMO)

Abstract

Metadata

Files

Supplemental Files

Related Datasets

Related Publications

Dataset: Habitat complexity photos collected along the Northern Central California coast from 2017 to 2021

Principal Investigator: Michael N. Dawson (University of California-Merced)

Contact: Lauren Schiebelhut (University of California-Merced)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath (PoGOMO)

Abstract

Metadata

Files

Supplemental Files

Related Datasets

Related Publications