Dataset: Coral gene expression Sequence Read Archive (SRA) accession numbers and information for samples collected at the Flower Garden Banks National Marine Sanctuary in the Gulf of Mexico in September and October of 2017 to capture effects of Hurricane Harvey

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.817298.1Version 1 (2020-06-30)Dataset Type:Other Field Results

Principal Investigator: Sarah W. Davies (Boston University)

Contact: Rachel Wright (Boston University)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)


Project: RAPID: Collaborative Research: Impact of freshwater runoff from Hurricane Harvey on coral reef benthic organisms and associated microbial communities (Rapid Reefs Harvey)


Abstract

To capture the immediate effects of storm-driven freshwater runoff on coral and symbiont physiology, we leveraged the heavy rainfall associated with Hurricane Harvey in late August 2017 by sampling FGB coral gene expression at two time points: September 2017, when surface water salinity was reduced (∼34 ppt); and 1 month later when salinity had returned to typical levels (∼36 ppt in October 2017). This dataset includes Sequence Read Archive (SRA) and BioSample accessions under BioProject PRJ...

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To capture the immediate effects of storm-driven freshwater runoff on coral and symbiont physiology, we leveraged the heavy rainfall associated with Hurricane Harvey in late August 2017 by sampling FGB coral gene expression at two time points: September 2017, when surface water salinity was reduced (∼34 ppt); and 1 month later when salinity had returned to typical levels (∼36 ppt in October 2017). 

This dataset includes Sequence Read Archive (SRA) and BioSample accessions under BioProject PRJNA552981 at The National Center for Biotechnology Information.  It also contains sample information and species names for samples collected the east and west banks of the Flower Garden Banks National Marine Sanctuary (FGBNMS) at 80ft.

These data were published in Wright et al. (2019).


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Related Publications

Methods

Wright, R. M., Correa, A. M. S., Quigley, L. A., Santiago-Vázquez, L. Z., Shamberger, K. E. F., & Davies, S. W. (2019). Gene Expression of Endangered Coral (Orbicella spp.) in Flower Garden Banks National Marine Sanctuary After Hurricane Harvey. Frontiers in Marine Science, 6. doi:10.3389/fmars.2019.00672
References

Boston University (2019). Coral holobiont gene expression Hurricane Harvey. 2019/07. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA552981. NCBI:BioProject: PRJNA552981.
Software

Jari Oksanen, F. Guillaume Blanchet, Michael Friendly, Roeland Kindt, Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs, Helene Wagner (2019) vegan: Community Ecology Package (R package version 2.5-6) https://cran.r-project.org/web/packages/vegan/index.html
Software

Michael Love, S. A. (2017). <i>DESeq2</i>. Bioconductor. https://doi.org/10.18129/B9.BIOC.DESEQ2
Software

R Core Team (2016) R: A language and environment for statistical computing. R Foundation for Statistical Computing. Vienna, Austria. https://www.r-project.org